Package index • NACHO

Load and normalise

Read RCC files, compute quality-control metrics and normalise counts.

load_rcc(): Produce a "nacho" object from RCC NanoString files
normalise(): (re)Normalise a "nacho" object
check_outliers(): Annotate a "nacho" object for outliers

Visualise and report

Explore quality control interactively, plot a single metric, or write a full report.

visualise(): Visualise quality-control metrics of a "nacho" object
autoplot(<nacho>): Plot quality-control metrics and thresholds of a "nacho" object
print(<nacho>): Print method for "nacho" object
render(): Render an HTML report of a "nacho" object

Shiny application

deploy(): Deploy (copy) the Shiny application to the specified directory

Data

GSE74821: A "nacho" object with 48 samples from the GSE74821 dataset